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Phase III+: The University is open for expanded research operations; only authorized personnel will be admitted on campus. More info here.

Software

The Bioinformatics team focuses on the development of Bioinformatics software for high-throughput analysis, quality control and visualization of biological data relevant to our work at the Rockefeller University. All software developed is publicly available through our github site or from online, peer-reviewed repositories.

We currently maintain 3 analysis pipelines (ATAC-seq, ChIP-seq and RNA-seq) to allow for the rapid and reproducible processing and initial analysis of these common data types.

We also developed and maintain five Bioconductor packages within the team: ChIPQC, BasecallQC, tracktablessoGGi and profileplyr.


Contact

IT Pavilion
The Rockefeller University
1230 York Avenue, Box 295
New York, NY 10065