Surface Plasmon Resonance (SPR)

SPR arises when photons are reflected from a conducting film at the interface between two media of different refractive indices. This phenomenon can be utilized by measuring a change in the angle of reflection of polarized near infra-red light on a gold surface, which occurs when the index of refraction of the surface changes. The Bio-Rad ProteOn XPR36 instrument is used to measure biomolecular interactions, specifically the association rate and dissociation rate of analytes from a biomolecule immobilized on one side of a gold film. In the instrument, light is reflected on the opposite side of a gold film to excite the surface plasmons, that is, the oscillations of free electrons propagating along the film's surface. The angle of reflection of polarized light reflecting off this surface is measured. When the immobilized biomolecules are bound by their ligands, an alteration in surface plasmons on the opposite side of the film is created that is directly proportional to the change in bound, or absorbed, mass. The HTSRC hosts a Bio-Rad ProteOn XPR36instrument and can provide guidance and support in its use.

Microscale Thermophoresis

The technique of microscale thermophoresis allows for the detection of conformational changes in molecules that can be a consequence of binding, aggregation or polymerization, provided the change results in a change in mass, charge or solvation shell. The approach is well-suited for measuring equilibrium binding affinities. The technique requires the presence of a fluorophore and can be accomplished with small samples of analyte (8 uL). The HTSRC hosts aNanoTemper MST monolith 115 and can provide training and guidance in this simple technique.

Circular Dichroism

Circular dichroism (CD) spectrometry measures very small differences in the absorption of right- and left-circularly polarized photons. This differential absorption correlates with the phenomenon of chirality. Changes in the CD spectrum correlate with protein secondary structure such as alpha-helixes or beta-sheets. Thus, CD spectrometry can be used to monitor changes in the secondary structure of biomolecules that possess chiral centers.

The HTSRC hosts an Aviv model 202 CD spectrometer and can provide guidance and training for its use.

NMR Spectroscopy

The University maintains facilities for nuclear magnetic resonance spectroscopy on campus. The University is also a member of the New York Structural Biology Center (NYSBC) and our researchers can access the NYBSC's instruments and support.

The on campus Spectroscopy Resource Center has two nuclear magnetic resonance spectrometers (one Bruker Avance DPX400 MHz with a BBFO probe and one Bruker Avance DPX600 MHz with a TCI cryoprobe) for use in studies of the structure, function and dynamics of macromolecules, as well as spectroscopic fingerprint of peptides and small organic molecules. The Center offers  training in the conduct of NMR experiments and also coordinates access to high field spectrometers (800 and 900 MHz) at the New York Structural Biology Center. Please note that use of the NYSBC's instruments should be scheduled two months in advance.

Dynamic Light Scattering

The HTSRC hosts a Wyatt dynapro plate reader which is a high-throughput dynamic light scattering instrument. The system can read 384-well plates and is ideally suited for measuring aggregation and solubility (average particle size) of small molecules and biomolecules. We routinely use this to test all of our screening hits as a quality control measure to ensure that the compounds are soluble at the concentration needed for the assay, and to ensure that there are no compound mediated protein aggregation artifacts. The instrument also can be used for polymerization dynamics.

User Guide to NMR Experiments

1D Proton NMR
Carbon and heteronuclear NMR
Magnitude COSY
NOE experiments
Gradient HMQC, HMBC, and HSQC
150 Basic NMR Experiments from Bruker

Surface Plasmon Resonance (SPR)SPR arises when photons are reflected from a conducting film at the interface between two media of different refractive indices. This phenomenon can be utilized by mea