SNP Genotyping and CNV Analysis

We offer a suite of SNP genotyping platforms and services to meet your SNP genotyping needs, from whole genome genotyping to individual SNPs. Contact Connie Zhao (Connie.Zhao@rockefeller.edu) if you have questions about choosing platforms.

Affymetrix Whole Genome Mapping Arrays

Our Affymetrix whole genome SNP genotyping service can be used in two ways:

Agilent Microarrays

We currently only provide full service for Agilent CGH arrays. Users need to provide us minimum 1ug genomic DNA samples. We will label the samples, set up hybridization, process and scan the arrays, and transfer data to users.

For all other Agilent microarrays, users need to provide us labeled samples and we will set up hybridization, process and scan the arrays, and transfer data to users.

Illumina Human Whole Genome Mapping Arrays

Services:

Because there are several special instruments needed to label the samples for Illumina arrays, users may not be able to do the labeling in their own labs. We provide full service for these products.

Taqman Assay for Genotyping Individual SNPs

If you have only a few SNPs to genotype, you can use Taqman assays on our Applied Biosystems 7900 System. You can chose from over 160,000 pre-validated assays (assay-by-demand), or you can have Applied Biosystems design custom SNP assays for you (assay-by-design).

For more information and for searching a SNP assay, go to www.appliedbiosystems.com